In reply to Zach Jenkins.

I realize I'm mostly shouting into the void on this one, but it looks like as part of the bugs, if the link editor gets stuck, or is still active and you try to to go a new link, even though when you go to save the draft it shows as an active link, the link is completely removed. You have to make sure the link editor is not active and quickly save to make sure that it will keep the necessary links. Also if you go back to the advanced link editor and make changes that also may remove the link. Of course some of this looks like this is only made worse in Chrome but I will have to test more.